Molecular clock dating using MrBayes

doi:10.19615/j.cnki.1000-3118.190408

Vertebrata Palasiatica ›› 2019, Vol. 57 ›› Issue (3): 241-252.DOI: 10.19615/j.cnki.1000-3118.190408

Molecular clock dating using MrBayes

ZHANG Chi¹^,²()

1 Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences Beijing 100044
2 CAS Center for Excellence in Life and Paleoenvironment Beijing 100044

Received:2019-01-14 Online:2019-07-20 Published:2019-07-20

MrBayes分子钟定年之程序

张驰¹^,²()

1 中国科学院古脊椎动物与古人类研究所,中国科学院脊椎动物演化与人类起源重点实验室北京 100044
2 中国科学院生物演化与环境卓越创新中心北京 100044

通讯作者: zhangchi@ivpp.ac.cn
基金资助:
中国科学院率先行动百人计划青年俊才(C类)和中国科学院战略性先导科技专项(B类)(XDB26000000)

Abstract

Abstract:

This paper provides an overview and a protocol of molecular clock dating using MrBayes. Two modern approaches, total-evidence dating and node dating, are demonstrated using a truncated dataset of Hymenoptera with molecular sequences and morphological characters. The similarity and difference of the two methods are compared and discussed. Besides, a non-clock analysis is performed on the same dataset to compare with the molecular clock dating analyses.

Key words: Bayesian phylogenetic inference, molecular clock dating, MCMC, MrBayes

摘要：

介绍了利用MrBayes进行分子钟定年的研究概况和程序。利用一个整合分子序列和形态特征的膜翅目昆虫的数据,展示了两种现代方法：全证据定年和节点定年,并对这两种方法的相似点和不同之处进行比较和讨论。此外,还用无分子钟的方法对同一数据进行分析,并与分子钟定年法进行比较。

关键词: 贝叶斯系统发育推断, 分子钟定年, 马尔可夫链蒙特卡罗, MrBayes

CLC Number:

Q91-3

ZHANG Chi. Molecular clock dating using MrBayes. Vertebrata Palasiatica, 2019, 57(3): 241-252.

张驰. 2019, 57(3): 241-252, MrBayes分子钟定年之程序. 古脊椎动物学报.

Figures/Tables 5

References 28

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Molecular clock dating using MrBayes

MrBayes分子钟定年之程序

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